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Pages
Posts
GPG signature of commits in GitHub
Published:
GitHub is a web-based version-control and collaboration platform for software developers. I use it all the time to version the soruce code of my PhD project. The GRIAC and RBMB bioinformatical groups both have a github page setup as well, even though we don’t use it very much. But if we were to work together even more, we should be able to trust the commits we make to our collaborative repositories. For that reason, GitHub had instroduced signed commits. Below is a script to make a GPG signature and to add this to your local Git configuration to automatically sign your commits.
portfolio
publications
iFUSE: integrated fusion gene explorer
Published in Bioinformatics, 2013
Recommended citation: S. Hiltemann et al. (2013). "iFUSE: integrated fusion gene explorer" Bioinformatics. 12(5610). http://www.doi.org/10.1093/bioinformatics/btt252
Determinants of expression of SARS-CoV-2 entry-related genes in upper and lower airways
Published in Allergy, 2021
Recommended citation: H. Aliee et al. (2021). "Determinants of expression of SARS-CoV-2 entry-related genes in upper and lower airways" (Allergy). https://doi.org/10.1111/all.15152
High miR203a-3p and miR-375 expression in the airways of smokers with and without COPD
Published in Scientific Reports, 2022
Recommended citation: J. van Nijnatten et al. (2022). "High miR203a-3p and miR-375 expression in the airways of smokers with and without COPD" (Scientific Reports). https://doi.org/10.1038/s41598-022-09093-0
Identification of asthma-associated microRNAs in bronchial biopsies
Published in European Respiratory Journal, 2022
Recommended citation: M.P. Roffel et al. (2022). "Identification of asthma-associated microRNAs in bronchial biopsies" (European Respiratory Journal). https://doi.org/10.1183/13993003.01294-2021
Association of bronchial steroid inducible methylation quantitative trait loci with asthma and chronic obstructive pulmonary disease treatment response
Published in Clinical and Translational Allergy, 2022
Recommended citation: E.M.A. Slob et al. (2022). "Association of bronchial steroid inducible methylation quantitative trait loci with asthma and chronic obstructive pulmonary disease treatment response" (Clinical and Translational Allergy). https://doi.org/10.1002/clt2.12173
Smoking induces shifts in cellular composition and transcriptome within the bronchial mucus barrier
Published in Respirology, 2022
Recommended citation: S.N.H. Rathnayake et al. (2022). "Identification of asthma-associated microRNAs in bronchial biopsies" (Respirology). https://doi.org/10.1111/resp.14401
talks
Uniquely differentlially expressed genes in bronchial brushings from severe COPD patients
Published:
This is a description of your conference proceedings talk, note the different field in type. You can put anything in this field.
teaching
Teaching experience 1
Undergraduate course, University of Technology, Sydney - Department of medical sciences, 2023
This is a description of a teaching experience. You can use markdown like any other post.